Ba3-Type Cytochrome-C Oxidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ba3-Type Cytochrome-C Oxidase
  Conformer 1
(PDB)
2ify (A)
  Conformer 2
(PDB)
4my4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 268 0.61   4 - 76   313 - 507
2 228 2.47   77 - 312

Sequence


           _________________________________________________________________________76_____________________________________________ 
 2ify(A) : RKPTALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHTTLTACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGV 
         :                                                                                                                          
 4my4(A) : KKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGV 
           _________________________________________________________________________77_____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ify(A) : HSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKETGVGQFATISGRYYSMDRDKRWDRVEKCYRAMVNGEGPTYKSAEECVEDSYANGIYDEFVLPSVIVNED 
         :                                                                                                                          
 4my4(A) : HSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQN 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________312_______________________________________________ 
 2ify(A) : NTPVATINDDDAVIFYNFRPDRAIQIARVFTNGDFREFDRGEKVPHIPE--FVCMTHFSETVDGYVAFKPMNLDNTLGEVVAQAGLKQLRIAETEKYPHVTFFFSGGREAEFPGEERILI 
         :                                                                                                                          
 4my4(A) : DG----VNDGDAVIFYNFRPDRAAQLSEIFAN---RAFE-GFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLI 
           ______________________________________________________________________307_______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ify(A) : NSPKVATYDLKPEMSIYEVTDALVNEIENDKHDVIILNFANCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADEELTSEGEPMTAHTTNPVPFIVTKNDVELRE 
         :                                                                                                                          
 4my4(A) : DSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRE 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 2ify(A) : DGILGDIAPTMLTLLGVEQPKEMTGKTIIK*                                                                                          
         :                                                                                                                          
 4my4(A) : TGRLGDLAPTLLDLLNVEQPEDMTGESLIKH                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.0
Translation
(A)
-1.1
Closure
(%)
75.0
Bending Residues
( green )
  76 - 77
  312 - 314
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download