Bovine Mitochondrial F1-Atpase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bovine Mitochondrial F1-Atpase
  Conformer 1
(PDB)
1e1q (G)
  Conformer 2
(PDB)
1e79 (G)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 94 0.67   3 - 246
2 24 0.23   247 - 270

Sequence


           ________________________________________________________________________________________________________________________ 
 1e1q(G) : ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVY---------------------------lCGAIHSSVAKQMK----------------------------------- 
         :                                                                                                                          
 1e79(G) : ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPElIIGVSSDRGLCGAIHSSVAKQMKSEAANLkEVKIIGVGDKIRSILHRTHSDQFLVTFK 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________________________________246___ 
 1e1q(G) : -------------------------------------------------------------------------------lANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLT 
         :                                                                                                                          
 1e79(G) : EVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLT 
           __________________________________________________________________________________________________________________246___ 

           _______________________                                                                                                  
 1e1q(G) : FNRTRQAVITKELIEIISGAAAL                                                                                                  
         :                                                                                                                          
 1e79(G) : FNRTRQAVITKELIEIISGAAAL                                                                                                  
           _______________________                                                                                                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.8
Translation
(A)
-0.2
Closure
(%)
46.5
Bending Residues
( green )
  246 - 248
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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