Bse634i Restriction Endonuclease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bse634i Restriction Endonuclease
  Conformer 1
(PDB)
1knv (A)
  Conformer 2
(PDB)
1knv (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 184 0.55   91 - 93   98 - 161   173 - 279   282 - 291
2 102 0.65   6 - 90   94 - 97   162 - 172   280 - 281

Sequence


           ______________________________________________________________________________________90_93__97_________________________ 
 1knv(A) : *NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETRE 
         :                                                                                                                          
 1knv(B) : TNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETRE 
           ______________________________________________________________________________________90_93__97_________________________ 

           ____________________________________161______170________________________________________________________________________ 
 1knv(A) : KLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSE 
         :                                                                                                                          
 1knv(B) : KLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSE 
           ____________________________________161______170________________________________________________________________________ 

           __________________________________279______________                                                                      
 1knv(A) : PVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK                                                                      
         :                                                                                                                          
 1knv(B) : PVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK                                                                      
           __________________________________279______________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.8
Translation
(A)
0.3
Closure
(%)
49.1
Bending Residues
( green )
  90 - 91
  93 - 94
  97 - 98
  161 - 162
  170 - 174
  279 - 282
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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