Calmodulin-Domain Protein Kinase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin-Domain Protein Kinase 1
  Conformer 1
(PDB)
3i79 (A)
  Conformer 2
(PDB)
3i7c (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 359 0.76   52 - 357   437 - 499
2 38 1.3   358 - 385   425 - 436

Sequence


           ________________________________________________________________________________________________________________________ 
 3i79(A) : **AIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGI 
         :                                                                                                                          
 3i7c(A) : STAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNI-kLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3i79(A) : TYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAK 
         :                                                                                                                          
 3i7c(A) : TY-hKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKK-kDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAK 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________345_________________________________________________________ 
 3i79(A) : DLIRKMLTYVPSMRISARDALDHEWIQTYTKEQISVDVPSLDNAILNIRQFQGTQKLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASA 
         :                                                                                                                          
 3i7c(A) : DLIRK-lTYVPS-rISARDALDHEWIQTYTKEQ---dVPSLDNAILNIRQFQGTQKLAQAALLY-gSKLTSQDETKELTAIFHK-dKNGDGQLDRAELIEGYKELr--kGQDAS-lDASA 
           ____________________________________________________________345_________________________________________________________ 

           _______________________________436_______________________________________________________________________                
 3i79(A) : VEHEVDQVLDAVDF--------sEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKLCGN                
         :                                                                                                                          
 3i7c(A) : VEHEVDQVLDAVDFDKNGYIEYSEFVTVA-dRKTLLSRERLERAFR-fDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQ-lLKLCGN                
           _______________________________436_______________________________________________________________________                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.1
Translation
(A)
-0.2
Closure
(%)
94.9
Bending Residues
( green )
  345 - 358
  436 - 437
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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