Casein Kinase II, Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Casein Kinase II, Alpha Chain
  Conformer 1
(PDB)
1jam (A)
  Conformer 2
(PDB)
1zoh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 274 0.39   9 - 24   28 - 30   41 - 42   53 - 65   80 - 98   100 - 102   112 - 329
2 47 0.56   25 - 27   31 - 40   43 - 52   66 - 79   99 - 99   103 - 111

Sequence


           _________________24_27_30________40__________52___________65____________79_________________98__________111______________ 
 1jam(A) : *SKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY 
         :                                                                                                                          
 1zoh(A) : MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY 
           _________________24_27_30________40__________52___________65____________79_________________98__________111______________ 

           ________________________________________________________________________________________________________________________ 
 1jam(A) : PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKI 
         :                                                                                                                          
 1zoh(A) : PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________                                 
 1jam(A) : AKVLGTDGLNVYLNKYRIELDPQLEALVGRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQVRAAENS                                 
         :                                                                                                                          
 1zoh(A) : AKVLGTDGLNVYLNKYRIELDPQLEALVGRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQVRAAE**                                 
           ________________________________________________________________________________________                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.9
Translation
(A)
0.1
Closure
(%)
90.3
Bending Residues
( green )
  24 - 25
  27 - 28
  30 - 31
  40 - 43
  52 - 53
  65 - 66
  79 - 80
  98 - 103
  111 - 112
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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