Copper Chaperone For Superoxide Dismutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Copper Chaperone For Superoxide Dismutase
  Conformer 1
(PDB)
1jk9 (B)
  Conformer 2
(PDB)
1qup (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 145 0.96   76 - 220
2 69 1.62   5 - 75

Sequence


           ___________________________________________________________________70___________________________________________________ 
 1jk9(B) : *TNDTYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKPNSSAVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVN 
         :                                                                                                                          
 1qup(A) : TTNDTYEATYAIP-hCENCVNDIKACLKNVPGINSLNFDIEQQI-sVESSVAPSTIINTLRNCGKDAIIRGAGKPNSSAVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVN 
           ___________________________________________________________________70___________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1jk9(B) : GVPEAGNYHASIHEKGDVSKGVESTGKVWHKFDEPIECFNESDLGKNLYSGKTFLSAPLPTWQLIGRSFVISKSLNHPENEPSSVKDYSFLGVIARSAGVWENNKQVCACTGKTVWEERK 
         :                                                                                                                          
 1qup(A) : GVPEAGNYHASIHEKGDVSKGVESTGKVWHKFDEPIECFNESDLGKNLYSGKTFLSAPLPTWQLIGRSFVISKSLNHPENEPSSVKDYSFLGVIARSAGVW******************* 
           ________________________________________________________________________________________________________________________ 

           ____                                                                                                                     
 1jk9(B) : DALA                                                                                                                     
         :                                                                                                                          
 1qup(A) : ****                                                                                                                     
           ____                                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
25.5
Translation
(A)
-1.7
Closure
(%)
1.5
Bending Residues
( green )
  70 - 78
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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