3-Deoxy-D-Manno-2-Octulosonic Acid Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Deoxy-D-Manno-2-Octulosonic Acid Transferase
  Conformer 1
(PDB)
2xcu (A)
  Conformer 2
(PDB)
2xci (A)
  Window Length 9
  Minimum ratio 0.5
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 303 0.29   4 - 183   186 - 191   207 - 209   226 - 310   320 - 348
2 42 0.27   184 - 185   192 - 206   210 - 225   311 - 319

Sequence


           ________________________________________________________________________________________________________________________ 
 2xcu(A) : *HMQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNA 
         :                                                                                                                          
 2xci(A) : RHMQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNA 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________183_____191____________206________________225_____________ 
 2xcu(A) : YAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLE 
         :                                                                                                                          
 2xci(A) : YAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLE 
           ______________________________________________________________183_____191____________206________________225_____________ 

           __________________________________________________________________307_________319_________________________________       
 2xcu(A) : GDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG       
         :                                                                                                                          
 2xci(A) : GDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG       
           __________________________________________________________________307_________319_________________________________       

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.4
Translation
(A)
0.0
Closure
(%)
3.4
Bending Residues
( green )
  183 - 186
  191 - 192
  206 - 207
  209 - 213
  225 - 226
  307 - 313
  319 - 320
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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