D(-)-3-Hydroxybutyrate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D(-)-3-Hydroxybutyrate Dehydrogenase
  Conformer 1
(PDB)
1wmb (A)
  Conformer 2
(PDB)
2ztl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 228 0.36   3 - 188   217 - 258
2 28 0.37   189 - 216

Sequence


           ________________________________________________________________________________________________________________________ 
 1wmb(A) : MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 
         :                                                                                                                          
 2ztl(A) : MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________187__________________________216________________________ 
 1wmb(A) : GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLAS 
         :                                                                                                                          
 2ztl(A) : GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLAS 
           ________________________________________________________________187__________________________216________________________ 

           ____________________                                                                                                     
 1wmb(A) : DAAAQITGTTVSVDGGWTAR                                                                                                     
         :                                                                                                                          
 2ztl(A) : DAAAQITGTTVSVDGGWTAR                                                                                                     
           ____________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
28.1
Translation
(A)
-0.1
Closure
(%)
63.9
Bending Residues
( green )
  187 - 192
  216 - 217
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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