Dihydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Synthase
  Conformer 1
(PDB)
3m5v (D)
  Conformer 2
(PDB)
3ler (B)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 205 0.17   7 - 13   33 - 44   78 - 256   273 - 282   292 - 293
2 75 0.19   14 - 32   45 - 77   257 - 272   283 - 291

Sequence


           _________13_________________32________42_________________________________77_____________________________________________ 
 3m5v(D) : DKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEH 
         :                                                                                                                          
 3ler(B) : DKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEH 
           _________13_________________32________42_________________________________77_____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3m5v(D) : YKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNINK 
         :                                                                                                                          
 3ler(B) : YKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGV-eASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNINK 
           ________________________________________________________________________________________________________________________ 

           ________256__________270________281______291_______                                                                      
 3m5v(D) : ILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                      
         :                                                                                                                          
 3ler(B) : ILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                      
           ________256__________270________281______291_______                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.6
Translation
(A)
-0.1
Closure
(%)
95.0
Bending Residues
( green )
  13 - 14
  32 - 33
  42 - 45
  77 - 78
  256 - 257
  270 - 273
  281 - 285
  291 - 293
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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