DNA Polymerase Eta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Polymerase Eta
  Conformer 1
(PDB)
1jih (A)
  Conformer 2
(PDB)
2r8k (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 382 0.99   3 - 94   101 - 116   124 - 395   430 - 430   502 - 502
2 123 0.96   95 - 100   117 - 123   396 - 429   431 - 501   503 - 507

Sequence


           ______________________________________________________________________________________________94___100____________115___ 
 1jih(A) : **MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQ 
         :                                                                                                                          
 2r8k(A) : GRMSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQ 
           ______________________________________________________________________________________________94___100____________115___ 

           __123___________________________________________________________________________________________________________________ 
 1jih(A) : ISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVIL 
         :                                                                                                                          
 2r8k(A) : ISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVIL 
           __123___________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1jih(A) : ALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRS 
         :                                                                                                                          
 2r8k(A) : ALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRS 
           ________________________________________________________________________________________________________________________ 

           __________________________________395_______________________________429_________________________________________________ 
 1jih(A) : TSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGI 
         :                                                                                                                          
 2r8k(A) : TSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGI 
           __________________________________395_______________________________429_________________________________________________ 

           ____________________501________                                                                                          
 1jih(A) : KFVTDLDIKGKNKSYYPLTKLSMTITNFDII                                                                                          
         :                                                                                                                          
 2r8k(A) : KFVTDLDIKGKNKSYYPLTKLSMTITNFDII                                                                                          
           ____________________501________                                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.6
Translation
(A)
-0.5
Closure
(%)
51.4
Bending Residues
( green )
  94 - 95
  100 - 101
  115 - 117
  123 - 124
  395 - 396
  429 - 436
  501 - 503
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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