D-3-Phosphoglycerate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-3-Phosphoglycerate Dehydrogenase
  Conformer 1
(PDB)
1ygy (A)
  Conformer 2
(PDB)
2g76 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 188 1.1   99 - 286
2 106 1.62   8 - 98   287 - 301

Sequence


           _______________________________________________________________________________________________98_______________________ 
 1ygy(A) : SLPVVLIADKLAPSTVAALGDQ-VEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAA 
         :                                                                                                                          
 2g76(A) : *LRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQA 
           ______________________________________________________________________________________________100_______________________ 

           ________________________________________________________________________________________________________________________ 
 1ygy(A) : DASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 
         :                                                                                                                          
 2g76(A) : TASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGA 
           ________________________________________________________________________________________________________________________ 

           __________________________________________286___________________________________________________________________________ 
 1ygy(A) : LADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEE 
         :                                                                                                                          
 2g76(A) : LLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMV********************************************************* 
           __________________________________________288___________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ygy(A) : VEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTLLGTAGVN 
         :                                                                                                                          
 2g76(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________                                                                         
 1ygy(A) : IQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS                                                                         
         :                                                                                                                          
 2g76(A) : ************************************************                                                                         
           ________________________________________________                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.3
Translation
(A)
-1.0
Closure
(%)
98.8
Bending Residues
( green )
  98 - 99
  286 - 287
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download