Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1exm (A)
  Conformer 2
(PDB)
2c78 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 98 0.6   216 - 313
2 203 0.59   11 - 213
3 90 0.64   314 - 403

Sequence


           ________________________________________________________________________________________________________________________ 
 1exm(A) : GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL 
         :                                                                                                                          
 2c78(A) : ******KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________210________________________________ 
 1exm(A) : ARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 
         :                                                                                                                          
 2c78(A) : ARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 
           _____________________________________________________________________________________210________________________________ 

           ____________________________________________________________________313_________________________________________________ 
 1exm(A) : ERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMV 
         :                                                                                                                          
 2c78(A) : ERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMV 
           ____________________________________________________________________313_________________________________________________ 

           ___________________________________________                                                                              
 1exm(A) : MPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                              
         :                                                                                                                          
 2c78(A) : MPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                              
           ___________________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
26.0
Translation
(A)
3.7
Closure
(%)
99.9
Bending Residues
( green )
  210 - 218
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
14.3
Translation
(A)
-0.6
Closure
(%)
80.5
Bending Residues
( green )
  313 - 314
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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