Epidermal Growth Factor Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Epidermal Growth Factor Receptor
  Conformer 1
(PDB)
3ltf (A)
  Conformer 2
(PDB)
3ltg (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 288 0.35   2 - 297
2 206 0.57   300 - 505

Sequence


           ________________________________________________________________________________________________________________________ 
 3ltf(A) : HHHKICIGTKSRLSVPSNKEHHYRNLRDRYTNCTYVDGNLELTWLPNENLDLSFLDNIREVTGYILISHVDVKKVVFPKLQIIRGRTLFSLSeEKYALFVTYSKMYTLEIPDLRDVLNGQ 
         :                                                                                                                          
 3ltg(A) : HHHKICIGTKSRLSVPSNKEHHYRNLRDRYTNCTYVDGNLELTWLPNENLDLSFLDNIREVTGYILISHVDVKKVVFPKLQIIRGRTLFSLSeEKYALFVTYSKMYTLEIPDLRDVLNGQ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3ltf(A) : VGFHNNYNLCHMRTIQWSEIVSNGTDAYaPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPT 
         :                                                                                                                          
 3ltg(A) : VGFHNNYNLCHMRTIQWSEIVSNGTDAYaPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPT 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________297____________________________________________________________________ 
 3ltf(A) : TYVLETNPEGKYAYGATCVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFSTV 
         :                                                                                                                          
 3ltg(A) : TYVLETNPEGKYAYGATCVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFSTV 
           _________________________________________________297____________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3ltf(A) : KEITGYLNIEGTHPQFRNLSYFRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWG 
         :                                                                                                                          
 3ltg(A) : KEITGYLNIEGTHPQFRNLSYFRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWG 
           ________________________________________________________________________________________________________________________ 

           __________________________________________                                                                               
 3ltf(A) : AGTDQCLNCKNFNFNGTCIADCGYISNAYKFDNRTCKICHcN                                                                               
         :                                                                                                                          
 3ltg(A) : AGTDQCLNCKNFNFNGTCIADCGYISNAYKFDNRTCKICHcN                                                                               
           __________________________________________                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.9
Translation
(A)
0.1
Closure
(%)
28.5
Bending Residues
( green )
  297 - 305
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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