Exopolyphosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Exopolyphosphatase
  Conformer 1
(PDB)
1u6z (B)
  Conformer 2
(PDB)
2flo (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 393 0.65   49 - 52   54 - 54   89 - 96   113 - 504
2 82 0.79   14 - 48   53 - 53   55 - 88   97 - 112

Sequence


           ____________________________________48__52__________________________________88______96_____________112__________________ 
 1u6z(B) : *EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVE 
         :                                                                                                                          
 2flo(D) : QEFAAVDLGSNSFH-vIARVVDGA-qIIGRLKQRVHLADGLGPDN-lSEEA-tRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIF-gVE 
           ____________________________________48__52__________________________________88______96_____________112__________________ 

           ________________________________________________________________________________________________________________________ 
 1u6z(B) : HTQPEKGRKLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASGTIKAAHEVLMEMGEKDGIITPERLEKLVKEVL 
         :                                                                                                                          
 2flo(D) : HTQPEKGRKLVIDIGGGSTELVIGENFEPILVESRR-gCVSFAQLYFPGGVINKENFQRAR-aAAQKLETLTWQFRIQGWNVA-gASGTIKAAHEVLe--gEKDGIITPERLEKLVKEVL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1u6z(B) : RHRNFASLSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLH 
         :                                                                                                                          
 2flo(D) : RHRNFASLSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYE-eGRFRHQDVRSRTASSLANQYHIDSEQARRVLDTTq--yEQWREQQPKLAHPQLEALLRWAA-lH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1u6z(B) : EVGLNINHSGLHRHSAYILQNSDLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQ 
         :                                                                                                                          
 2flo(D) : EVGLNINHSGLHRHSAYILQNSDLPGFNQEQQL--aTLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQ 
           ________________________________________________________________________________________________________________________ 

           _____________________                                                                                                    
 1u6z(B) : EYWEGVAGWRLKIEEESTPEI                                                                                                    
         :                                                                                                                          
 2flo(D) : EYWEGVAGWRLKIEEE*****                                                                                                    
           _____________________                                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.1
Translation
(A)
0.3
Closure
(%)
95.8
Bending Residues
( green )
  48 - 49
  52 - 55
  88 - 89
  96 - 97
  112 - 113
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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