Fusion Protein Of Maltose-Binding Periplasmic Protein And Parathyroid Hormone/parathyroid Hormone-Related Peptide Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fusion Protein Of Maltose-Binding Periplasmic Protein And Parathyroid Hormone/parathyroid Hormone-Related Peptide Receptor
  Conformer 1
(PDB)
3c4m (A)
  Conformer 2
(PDB)
3c4m (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 362 0.25   -338 - -169   -165 - 26
2 99 0.56   -168 - -166   27 - 172

Sequence


           ________________________________________________________________________________________________________________________ 
 3c4m(A) : AKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK 
         :                                                                                                                          
 3c4m(B) : ****EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________-173___-166_____________________________________________________________ 
 3c4m(A) : DLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK 
         :                                                                                                                          
 3c4m(B) : DLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK 
           ________________________________________________-173___-166_____________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3c4m(A) : VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDE 
         :                                                                                                                          
 3c4m(B) : VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDE 
           ________________________________________________________________________________________________________________________ 

           _______24________________________________________________________________________________________________________        
 3c4m(A) : ALKDAQTNAAAEFDDVMTKEEQIFLLHRAQAQCEKRLKEV---rPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFL*        
         :                                                                                                                          
 3c4m(B) : ALKDAQTNAAAEFDDVMTKEEQIFLLHRAQAQCEKRLKEVLQgRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLT        
           _______24________________________________________________________________________________________________________        

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.5
Translation
(A)
0.3
Closure
(%)
99.9
Bending Residues
( green )
  -173 - -168
  -166 - -165
  24 - 27
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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