D-Maltodextrin-Binding Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Maltodextrin-Binding Protein 3
  Conformer 1
(PDB)
1anf  
  Conformer 2
(PDB)
1lls (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 160 0.44   111 - 154   156 - 165   167 - 167   185 - 260   315 - 329   331 - 337   342 - 348
2 160 0.5   4 - 110   261 - 312   330 - 330
3 43 0.65   155 - 155   166 - 166   168 - 184   338 - 341   349 - 368

Sequence


           _________________________________________________________________________________________________________108____________ 
 1anf    : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
         :                                                                                                                          
 1lls(A) : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
           _________________________________________________________________________________________________________108____________ 

           _______________________________154________165________________184________________________________________________________ 
 1anf    : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
         :                                                                                                                          
 1lls(A) : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
           _______________________________154________165________________184________________________________________________________ 

           ______________257__________________________________________________310_____________326________337_341____348____________ 
 1anf    : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
         :                                                                                                                          
 1lls(A) : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
           ______________257__________________________________________________310_____________326________337_341____348____________ 

           __________                                                                                                               
 1anf    : LKDAQTRITK                                                                                                               
         :                                                                                                                          
 1lls(A) : LKDAQTRITK                                                                                                               
           __________                                                                                                               

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
38.0
Translation
(A)
-0.9
Closure
(%)
90.9
Bending Residues
( green )
  108 - 113
  257 - 262
  310 - 319
  326 - 332
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
5.2
Translation
(A)
0.0
Closure
(%)
98.4
Bending Residues
( green )
  154 - 156
  165 - 168
  184 - 185
  337 - 339
  341 - 342
  348 - 349
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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