3-Phosphoshikimate 1-Carboxyvinyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Phosphoshikimate 1-Carboxyvinyltransferase
  Conformer 1
(PDB) 		3roi (A)
  Conformer 2
(PDB) 		4gfp (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 209 1.51   21 - 231   279 - 289
2 195 1.35   4 - 20   232 - 278   290 - 430

Sequence


           _________________18_____________________________________________________________________________________________________ 
 3roi(A) : AMDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSS 
         :                                                                                                                          
 4gfp(A) : **DYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGD-- 
           _________________18_____________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________231____________ 
 3roi(A) : LQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQsICVSGGGKLKANDISIPGDISSAAFFIVA 
         :                                                                                                                          
 4gfp(A) : lQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLP-aSAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQKiCVSGGGKLKANDISIPGDISSAAFFIVA 
           _________________________________________________________________________________________________________231____________ 

           ________________________________278_____________________________________________________________________________________ 
 3roi(A) : ATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNePTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESL 
         :                                                                                                                          
 4gfp(A) : ATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTe-----EPTADITVRHARLKGIDIPPDQVPL--dEFPVLLIAAAVAQGKTVLRD---lRVKETDRIAAMVDGLQKLGIAAESL 
           ________________________________278_____________________________________________________________________________________ 

           _______________________________________________________________________                                                  
 3roi(A) : PDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMNVKGVRGR                                                  
         :                                                                                                                          
 4gfp(A) : PDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRN-----tSFPNFVELANEVGMNVKGV***                                                  
           _______________________________________________________________________                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		30.8
Translation
(A) 		0.6
Closure
(%) 		95.6
Bending Residues
( green ) 		  18 - 21
  231 - 232
  278 - 290
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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