2-Succinylbenzoate--Coa Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Succinylbenzoate--Coa Ligase
  Conformer 1
(PDB)
5buq (A)
  Conformer 2
(PDB)
5bur (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 386 0.63   6 - 387   416 - 425
2 57 1.34   388 - 412   426 - 460

Sequence


           ________________________________________________________________________________________________________________________ 
 5buq(A) : LTEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQT 
         :                                                                                                                          
 5bur(A) : *TEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5buq(A) : IDVDELMKEAAEEIEIEAYMQMDATATLMYTS----kPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQT 
         :                                                                                                                          
 5bur(A) : IDVDELMKEAAEEIEIEAYMQMDATATLMYTSGTTGKPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5buq(A) : MLASLLEETNRCPESIRCILLGGGPAPLPLLEECREKGFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNG 
         :                                                                                                                          
 5bur(A) : MLASLLEETNRCPESIRCILLGGGPAPLPLLEECREKGFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNG 
           ________________________________________________________________________________________________________________________ 

           ___________________383____________________406________________________________________________________________________    
 5buq(A) : WLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPA-aEAGVSGAEDKKgKVPHAYL--hKPVSAGELTDYCKERLAKYKIPAKFFVLDR****************    
         :                                                                                                                          
 5bur(A) : WLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDK-gKVPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLPRNASNKLLRNQLKD    
           ___________________383____________________406________________________________________________________________________    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.7
Translation
(A)
1.3
Closure
(%)
100.0
Bending Residues
( green )
  383 - 390
  406 - 426
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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