Anti-Cleavage Anti-Grea Transcription Factor Gfh1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Anti-Cleavage Anti-Grea Transcription Factor Gfh1
  Conformer 1
(PDB)
2f23 (B)
  Conformer 2
(PDB)
2etn (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 120 1.43   5 - 67   70 - 88   95 - 96   101 - 131   133 - 133   151 - 154
2 30 1.4   68 - 69   89 - 94   97 - 100   132 - 132   134 - 150

Sequence


           ________________________________________________________________67___________________88____94___100_____________________ 
 2f23(B) : *REVKLTKAGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVILEEGSGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPMKISD 
         :                                                                                                                          
 2etn(B) : AREVKLTKAGYERLMKQLEQERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDVLSRAVILEEGTGEVIGLGSVVELEDPATGERLSVQVVSPAEASVLENPMKISD 
           ________________________________________________________________67___________________88____94___100_____________________ 

           _______131________________150______                                                                                      
 2f23(B) : ASPMGKALLGHRVGDVLSLDTPKGKREFRVVAIHG                                                                                      
         :                                                                                                                          
 2etn(B) : ASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAIHG                                                                                      
           _______131________________150______                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.1
Translation
(A)
0.1
Closure
(%)
76.6
Bending Residues
( green )
  67 - 70
  88 - 89
  94 - 97
  100 - 101
  131 - 134
  150 - 151
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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