Cdp-Glucose 4,6-Dehydratase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cdp-Glucose 4,6-Dehydratase
  Conformer 1
(PDB) 		1wvg (A)
  Conformer 2
(PDB) 		1wvg (B)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 260 0.54   8 - 199   210 - 211   239 - 266   304 - 321   329 - 332   335 - 352
2 69 0.69   200 - 209   212 - 238   267 - 290   322 - 328   333 - 334

Sequence


           ________________________________________________________________________________________________________________________ 
 1wvg(A) : SIDKNFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQ 
         :                                                                                                                          
 1wvg(B) : SIDKNFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQ 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________199_______209__________________________238____ 
 1wvg(A) : VGNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPANYEQHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENNQQVIIRNPYSIRPWQHVLEPLS 
         :                                                                                                                          
 1wvg(B) : VGNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPAN--qHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENNQQVIIRNPYSIRPWQHVLEPLS 
           _________________________________________________________________________1199______1209_________________________1238____ 

           _____________________266_____________________290__________________________321____328_332__________________________       
 1wvg(A) : GYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIVDKMVTLWGDDASWLLDp--HEAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHKAWIRGEDMLICSKREISDYMSA       
         :                                                                                                                          
 1wvg(B) : GYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIVDKMVTLWGD-aSWLLDGENHPHhYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHKAWIRGEDMLICSKREISDYMS*       
           ____________________1266____________________1290_________________________1321___1328______________________________       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.1
Translation
(A) 		0.0
Closure
(%) 		97.4
Bending Residues
( green ) 		  199 - 200
  209 - 212
  238 - 239
  266 - 269
  290 - 308
  321 - 322
  328 - 329
  332 - 335
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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