Complement C3 Alpha' Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Complement C3 Alpha' Chain
  Conformer 1
(PDB)
2i07 (B)
  Conformer 2
(PDB)
2icf (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 444 1.8   732 - 965   1271 - 1480   1484 - 1492
2 305 0.86   966 - 1270
3 148 0.74   1481 - 1483   1493 - 1639

Sequence


           ________________________________________________________________________________________________________________________ 
 2i07(B) : DEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPA 
         :                                                                                                                          
 2icf(B) : DEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPA 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________________965____ 
 2i07(B) : FCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMT 
         :                                                                                                                          
 2icf(B) : FCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMT 
           _________________________________________________________________________________________________________________965____ 

           ________________________________________________________________________________________________________________________ 
 2i07(B) : EDAVDAERLKHLIVTPSGCGEENMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEK 
         :                                                                                                                          
 2icf(B) : EDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2i07(B) : QKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVE 
         :                                                                                                                          
 2icf(B) : QKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVE 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________1262___________________________________________________________________ 
 2i07(B) : ATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAK 
         :                                                                                                                          
 2icf(B) : ATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAK 
           _________________________________________________1262___________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2i07(B) : AKDQLTCNKFDLKVTIKPAP--kNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVK 
         :                                                                                                                          
 2icf(B) : AKDQLTCNKFDLKVTIKPAPETkNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVK 
           ________________________________________________________________________________________________________________________ 

           ____________________1480________1492____________________________________________________________________________________ 
 2i07(B) : VYAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKdKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKK 
         :                                                                                                                          
 2icf(B) : VYAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKdKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKK 
           ____________________1480________1492____________________________________________________________________________________ 

           _______________________________________________________________                                                          
 2i07(B) : HYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN                                                          
         :                                                                                                                          
 2icf(B) : HYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN                                                          
           _______________________________________________________________                                                          

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.8
Translation
(A)
-1.7
Closure
(%)
99.7
Bending Residues
( green )
  965 - 971
  1262 - 1271
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
15.4
Translation
(A)
1.1
Closure
(%)
45.1
Bending Residues
( green )
  1480 - 1481
  1483 - 1484
  1492 - 1493
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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