Cytoglobin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cytoglobin
  Conformer 1
(PDB)
2dc3 (B)
  Conformer 2
(PDB)
1ut0 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 102 0.67   20 - 87   108 - 131   158 - 167
2 46 0.99   88 - 107   132 - 157

Sequence


           __________________________________________________________________________________87_________________107________________ 
 2dc3(B) : VPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVY 
         :                                                                                                                          
 1ut0(B) : **************ELSEAERKAVQAMWARLYANSEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHASRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVY 
           __________________________________________________________________________________87_________________107________________ 

           _____131_______________________157______________                                                                         
 2dc3(B) : FKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGW                                                                         
         :                                                                                                                          
 1ut0(B) : FKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGW                                                                         
           _____131_______________________157______________                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.1
Translation
(A)
0.3
Closure
(%)
96.3
Bending Residues
( green )
  87 - 88
  107 - 108
  131 - 132
  157 - 158
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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