Fibrinogen-Binding Protein Sdrg

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fibrinogen-Binding Protein Sdrg
  Conformer 1
(PDB)
1r19 (D)
  Conformer 2
(PDB)
1r17 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 147 0.59   424 - 579
2 136 0.63   279 - 423

Sequence


           ________________________________________________________________________________________________________________________ 
 1r19(D) : *SNVNHLIKVTDQSITEGYDDSDGIIKAHDAENLIYDVTFEVDDKVKSGDTMTVNIDKNTVPSDLTDS--iPKIKD---eIIATGTYDNTNKQITYT-tDYVD---nIKAHLKLTSYIDK 
         :                                                                                                                          
 1r17(A) : GSNVNHLIKVTDQSITEGYDDSDGIIKAHDAENLIYDVTFEVDDKVKSGDTMTVNIDKNTVPSDLTDSFAIPKIKDNSGEIIATGTYDNTNKQITYTFTDYVDKYENIKAHLKLTSYIDK 
           ________________________________________________________________________________________________________________________ 

           _________________________423____________________________________________________________________________________________ 
 1r19(D) : SKVPNNNTKLDVEYKTALSSVNKTITVEYQKPNENRTANLQSMFTNIDTKNHTVEQTIYINPLRYSAKETNVNISGNGDEGSTIIDDSTIIKVYKVGDNQNLPDSNRIYDYSEYEDVTND 
         :                                                                                                                          
 1r17(A) : SKVPNNNTKLDVEYKTALSSVNKTITVEYQKPNENRTANLQSMFTNIDTKNHTVEQTIYINPLRYSAKETNVNISGNGDEGSTIIDDSTIIKVYKVGDNQNLPDSNRIYDYSEYEDVTND 
           _________________________423____________________________________________________________________________________________ 

           _________________________________________________________________________________                                        
 1r19(D) : DYAQLGNNNDVNINFGNIDSPYIIKVISK--------tTIQQTVTMQTTINE-tGEFRTASYDNTIAFSTS**********                                        
         :                                                                                                                          
 1r17(A) : DYAQLGNNNDVNINFGNIDSPYIIKVISKYDPNKDDYTTIQQTVTMQTTINEYTGEFRTASYDNTIAFSTSSGQGQGDLPP                                        
           _________________________________________________________________________________                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.8
Translation
(A)
-0.4
Closure
(%)
36.4
Bending Residues
( green )
  423 - 424
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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