Fk506 Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fk506 Binding Protein
  Conformer 1
(PDB)
1eym (A)
  Conformer 2
(PDB)
1j4r (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 80 0.87   3 - 56   61 - 75   95 - 105
2 23 0.56   57 - 60   76 - 94

Sequence


           ______________________________________________________56_________________75_________________94_____________              
 1eym(A) : GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE              
         :                                                                                                                          
 1j4r(A) : GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE              
           ______________________________________________________56_________________75_________________94_____________              

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
-0.1
Closure
(%)
97.6
Bending Residues
( green )
  56 - 61
  75 - 76
  94 - 95
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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