Guanine Nucleotide Exchange Factor Dbs [Fragment]

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Guanine Nucleotide Exchange Factor Dbs [Fragment]
  Conformer 1
(PDB)
1rj2 (J)
  Conformer 2
(PDB)
1kz7 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 173 1.06   626 - 804
2 123 0.87   805 - 947

Sequence


           ________________________________________________________________________________________________________________________ 
 1rj2(J) : EEEESLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCS 
         :                                                                                                                          
 1kz7(A) : EEEESLAILRRHV-nELLDTERAYVEELLCVLEGYAAE-dNPL-aHLISTGLQNKKNILFGN-eEIYHFHNRIFLRELESCIDCPELVGRCFLER-eEFQIYEKYCQNKPRSESLWRQCS 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________804___________________________________________________________ 
 1rj2(J) : DCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHL 
         :                                                                                                                          
 1kz7(A) : DCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKE-lKYSKHCEGAEDLQEALSSILGILKAVNDS-hLIAITGYDGNLGDLGKLL-qGSFSVWTDHKKG-----eLARFKP-qRHL 
           __________________________________________________________804___________________________________________________________ 

           ______________________________________________________________________________________________________                   
 1rj2(J) : FLHEKAVLFCKKRE-----------ySYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNEIRKVLTSQLQAC*************                   
         :                                                                                                                          
 1kz7(A) : FLHEKAVLFCKKREENGEGYEKAPSYSYKQSLN-tAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQACREASQHRALEQSH                   
           ______________________________________________________________________________________________________                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.4
Translation
(A)
1.8
Closure
(%)
80.1
Bending Residues
( green )
  804 - 805
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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