Immunoglobulin, Diels Alder Catalytic Antibody

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Immunoglobulin, Diels Alder Catalytic Antibody
  Conformer 1
(PDB)
1a4j (H)
  Conformer 2
(PDB)
1i7z (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 115 1.75   3 - 119
2 96 1.56   120 - 215

Sequence


           ____________________________________________________________________________________________________________________119_ 
 1a4j(H) : QVQLLESGPELKKPGETVKISCKASGYTFTNYGMNWVKQAPGKGLKWMGWINTYTGEPTYADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFCVQAERLRRTFDYWGAGTTVTVSSA 
         :                                                                                                                          
 1i7z(D) : QVQLQQSGPELKKPGETVKISCKTSGYSFTNYGMNWVKQAPGKGLKWMGWINTYTGEPTYADDFRGRFAFSLATSASTAYLQIINLKNEDTATYFCETYDS--PLGDYWGQGTTVTVSSA 
           ____________________________________________________________________________________________________________________113_ 

           ______________________________________________________________________________________________________                   
 1a4j(H) : STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKV*****                   
         :                                                                                                                          
 1i7z(D) : STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC                   
           ______________________________________________________________________________________________________                   

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
36.1
Translation
(A)
-0.1
Closure
(%)
92.5
Bending Residues
( green )
  119 - 120
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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