Intercellular Adhesion Molecule-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Intercellular Adhesion Molecule-1
  Conformer 1
(PDB)
1ic1 (B)
  Conformer 2
(PDB)
1ic1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 106 0.8   83 - 188
2 80 1.07   3 - 82

Sequence


           ________________________________________________________________________________82______________________________________ 
 1ic1(B) : QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLT 
         :                                                                                                                          
 1ic1(A) : QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLT 
           ________________________________________________________________________________82______________________________________ 

           ______________________________________________________________________                                                   
 1ic1(B) : VVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT                                                   
         :                                                                                                                          
 1ic1(A) : VVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT                                                   
           ______________________________________________________________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.4
Translation
(A)
-0.4
Closure
(%)
98.2
Bending Residues
( green )
  82 - 83
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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