Ketol-Acid Reductoisomerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ketol-Acid Reductoisomerase
  Conformer 1
(PDB)
1yrl (D)
  Conformer 2
(PDB)
1yrl (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 328 0.4   7 - 18   97 - 98   102 - 143   153 - 155   174 - 176   210 - 474   476 - 476
2 134 0.54   19 - 96   99 - 101   144 - 152   156 - 173   177 - 209   475 - 475   477 - 485

Sequence


           ______________18____________________________________________________________________________96__101_____________________ 
 1yrl(D) : NYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIV------lNQGLNMRDSGLDISYALRKEAIAE-----------gFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQPLM 
         :                                                                                                                          
 1yrl(A) : NYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQPLM 
           ______________18____________________________________________________________________________96__101_____________________ 

           __________________143______152__________________173_________________________________209_________________________________ 
 1yrl(D) : KDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVE 
         :                                                                                                                          
 1yrl(A) : KDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVE 
           __________________143______152__________________173_________________________________209_________________________________ 

           ________________________________________________________________________________________________________________________ 
 1yrl(D) : EGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVLMI 
         :                                                                                                                          
 1yrl(A) : EGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVLMI 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________474________ 
 1yrl(D) : AMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGYMT 
         :                                                                                                                          
 1yrl(A) : AMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGYMT 
           _____________________________________________________________________________________________________________474________ 

           _______                                                                                                                  
 1yrl(D) : DMKRIAV                                                                                                                  
         :                                                                                                                          
 1yrl(A) : DMKRIAV                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.0
Translation
(A)
-0.1
Closure
(%)
35.7
Bending Residues
( green )
  18 - 19
  96 - 99
  101 - 102
  143 - 144
  152 - 153
  155 - 156
  173 - 174
  176 - 177
  209 - 211
  474 - 477
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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