Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1j6z (A)
  Conformer 2
(PDB)
6bno (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 239 1.71   10 - 13   25 - 27   86 - 90   94 - 94   99 - 106   116 - 126   128 - 132   141 - 339   354 - 356
2 110 2.39   7 - 9   14 - 24   28 - 85   91 - 93   95 - 98   107 - 115   127 - 127   133 - 140   340 - 353

Sequence


           _____9__13_________24_27________________________________________________________85___90_93___98_____106______115________ 
 1j6z(A) : ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
         :                                                                                                                          
 6bno(C) : *TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
           _____9__13_________24_27________________________________________________________85___90_93___98_____106______115________ 

           126___132_____140_______________________________________________________________________________________________________ 
 1j6z(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
         :                                                                                                                          
 6bno(C) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
           126___132_____140_______________________________________________________________________________________________________ 

           __________________________________________________________________________________________336______________353__________ 
 1j6z(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
         :                                                                                                                          
 6bno(C) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
           __________________________________________________________________________________________336______________353__________ 

           _________                                                                                                                
 1j6z(A) : EAGPSIVHR                                                                                                                
         :                                                                                                                          
 6bno(C) : EAGPSIVH*                                                                                                                
           _________                                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.7
Translation
(A)
0.3
Closure
(%)
13.8
Bending Residues
( green )
  9 - 10
  13 - 14
  24 - 25
  27 - 28
  85 - 86
  90 - 91
  93 - 95
  98 - 99
  106 - 107
  115 - 116
  126 - 128
  132 - 133
  140 - 144
  336 - 340
  353 - 356
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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