Argonaute

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Argonaute
  Conformer 1
(PDB)
3f73 (A)
  Conformer 2
(PDB)
3dlb (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 1.64   7 - 10   309 - 328   338 - 338   462 - 603   613 - 638
2 297 2.06   11 - 308   611 - 612
3 132 0.93   329 - 337   339 - 461

Sequence


           ______10________________________________________________________________________________________________________________ 
 3f73(A) : **GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLR 
         :                                                                                                                          
 3dlb(A) : HLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLR 
           ______10________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3f73(A) : RLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVA 
         :                                                                                                                          
 3dlb(A) : RLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVA 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________308_________________328______337_________________________ 
 3f73(A) : WVADPKDPRKPIPHLTGLLVPVLTLEDLHEEEGSLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLR 
         :                                                                                                                          
 3dlb(A) : WVADPKDPRKPIPHLTGLLVPVLTLEDLHE---sLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLR 
           _______________________________________________________________308_________________328______337_________________________ 

           ________________________________________________________________________________________________461_____________________ 
 3f73(A) : RALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGR 
         :                                                                                                                          
 3dlb(A) : RALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGR 
           ________________________________________________________________________________________________461_____________________ 

           ______________________________________________________________________________________________________________________60 
 3f73(A) : ESFRFGGAACAVGG-gGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRDGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFL 
         :                                                                                                                          
 3dlb(A) : ESFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRDGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFL 
           ______________________________________________________________________________________________________________________60 

           3__________________________________________________________________________________                                      
 3f73(A) : LLTVHR--rGTPRPLKLVHEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLFFV                                      
         :                                                                                                                          
 3dlb(A) : LLTVHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLY*******************************************                                      
           3__________________________________________________________________________________                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.8
Translation
(A)
0.2
Closure
(%)
69.6
Bending Residues
( green )
  10 - 11
  308 - 309
  603 - 613
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
18.4
Translation
(A)
-0.7
Closure
(%)
99.4
Bending Residues
( green )
  328 - 329
  337 - 339
  461 - 462
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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