Atp Synthase Beta Chain, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Synthase Beta Chain, Mitochondrial
  Conformer 1
(PDB)
2hld (D)
  Conformer 2
(PDB)
1h8e (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 261 1.23   11 - 129   152 - 152   179 - 186   190 - 218   223 - 255   258 - 329
2 181 0.95   132 - 151   153 - 172   187 - 189   219 - 222   256 - 257   330 - 461

Sequence


           ________________________________________________________________________________________________________________________ 
 2hld(D) : STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFA 
         :                                                                                                                          
 1h8e(E) : ***TTGRIVAVIGAVVDVQFDEG-LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFV 
           ________________________________________________________________________________________________________________________ 

           _129___________________151__________________172___________186______________________________218__________________________ 
 2hld(D) : EQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINL-EGESKVALVFGQMNEPPGARARVALTGLTIAEYFR 
         :                                                                                                                          
 1h8e(E) : EMeQ--EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFR 
           _130___________________150__________________171___________185______________________________218__________________________ 

           ________255_______________________________________________________________________329___________________________________ 
 2hld(D) : DEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVG 
         :                                                                                                                          
 1h8e(E) : DQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVG 
           ________255_______________________________________________________________________329___________________________________ 

           _______________________________________________________________________________________________________________          
 2hld(D) : QEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAA          
         :                                                                                                                          
 1h8e(E) : SEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIE***********          
           _______________________________________________________________________________________________________________          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.9
Translation
(A)
0.7
Closure
(%)
84.5
Bending Residues
( green )
  129 - 133
  151 - 153
  172 - 182
  186 - 191
  218 - 223
  255 - 258
  329 - 331
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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