Avermectin-Sensitive Glutamate-Gated Chloride Channel Glucl Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Avermectin-Sensitive Glutamate-Gated Chloride Channel Glucl Alpha
  Conformer 1
(PDB)
4tnw (A)
  Conformer 2
(PDB)
4tnv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 234 0.96   3 - 222   268 - 281   336 - 338
2 99 0.65   223 - 267   282 - 335

Sequence


           ________________________________________________________________________________________________________________________ 
 4tnw(A) : SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLY 
         :                                                                                                                          
 4tnv(A) : SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHT---pNVLIRIHNDGTVLY 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________222__________________ 
 4tnw(A) : SVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRT 
         :                                                                                                                          
 4tnv(A) : SVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRT 
           ___________________________________________________________________________________________________222__________________ 

           ________________________267___________281___________________________________________________335_______                   
 4tnw(A) : AIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGHHH                   
         :                                                                                                                          
 4tnv(A) : AIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGH**                   
           ________________________267___________281___________________________________________________335_______                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.8
Translation
(A)
0.0
Closure
(%)
9.0
Bending Residues
( green )
  222 - 225
  267 - 268
  281 - 282
  335 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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