Chromosome Segregation Smc Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chromosome Segregation Smc Protein
  Conformer 1
(PDB)
1gxj (B)
  Conformer 2
(PDB)
1gxl (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 100 0.6   499 - 582   599 - 614
2 50 0.95   583 - 598   615 - 648

Sequence


           _________________________________________________________________________________________________________582____________ 
 1gxj(B) : *********************YRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVG 
         :                                                                                                                          
 1gxl(B) : KEKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVG 
           _________________________________________________________________________________________________________582____________ 

           597______________614_________________________________________________________________                                    
 1gxj(B) : YAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGR**********************                                    
         :                                                                                                                          
 1gxl(B) : YAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME                                    
           597______________614_________________________________________________________________                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.5
Translation
(A)
-0.4
Closure
(%)
70.6
Bending Residues
( green )
  582 - 583
  597 - 601
  614 - 615
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download