Citrate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Citrate Synthase
  Conformer 1
(PDB)
1iom (A)
  Conformer 2
(PDB)
1ixe (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 20 0.84   20 - 27   257 - 268
2 279 1.17   5 - 19   28 - 223   271 - 280   317 - 374
3 65 0.55   224 - 256   285 - 316

Sequence


           _______________19______27_______________________________________________________________________________________________ 
 1iom(A) : VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGL 
         :                                                                                                                          
 1ixe(B) : VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGL 
           _______________19______27_______________________________________________________________________________________________ 

           _____________________________________________________________________________________________218________________________ 
 1iom(A) : DLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 
         :                                                                                                                          
 1ixe(B) : DLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 
           _____________________________________________________________________________________________218________________________ 

           ___________256________267_271__________________________________________316______________________________________________ 
 1iom(A) : VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKY 
         :                                                                                                                          
 1ixe(B) : VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAE----sKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKY 
           ___________256________267_271__________________________________________316______________________________________________ 

           ______________                                                                                                           
 1iom(A) : VGELDVPYVPLEAR                                                                                                           
         :                                                                                                                          
 1ixe(B) : VGELDVPYVPLEAR                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 23.5 0.1 36.9   19 - 20   27 - 28   267 - 280 Bending Region Analysis
1 3 31.5 0.6 65.5   256 - 259 Bending Region Analysis
2 3 29.6 0.5 67.5   218 - 224   271 - 286   316 - 319 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download