Cmp-N-Acetylneuraminate-Beta-Galactosamide-Alpha-2,3- Sialyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cmp-N-Acetylneuraminate-Beta-Galactosamide-Alpha-2,3- Sialyltransferase
  Conformer 1
(PDB) 		2yk4 (A)
  Conformer 2
(PDB) 		2yk5 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 195 0.46   54 - 243   298 - 304   349 - 355
2 109 0.45   244 - 297   305 - 348   356 - 368

Sequence


           ________________________________________________________________________________________________________________________ 
 2yk4(A) : EPVNLIFCYTILQkVAERIaQHPGERFYVVLsENRNEKYDYYFNQIKDKAEWAYFFHLPYGLNKSFNFIPTaELKVKAlLPKVKRIYLASLEKVSIAAFLSTYPDAEIKTFDDGTINLIQ 
         :                                                                                                                          
 2yk5(A) : *PVNLIFCYTILQkVAERIaQHPGERFYVVLsENRNEKYDYYFNQIKDKAEWAYFFHLPYGLNKSFNFIPTaELKVKAlLPKVKRIYLASLEKVSIAAFLSTYPDAEIKTFDDGTINLIQ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________243________________________________________________295__ 
 2yk4(A) : SSSYLGDEFSVNGTIKRNFARiGDWSIAKTRNASDEHYTIFKGLKNIdDGRRKtYLPLFDASELKAGDETGGTVRILLGSPDKEkEISEKAAKNFNIQYVAPHPRQTYGLSGVTTLNSPY 
         :                                                                                                                          
 2yk5(A) : SSSYLGDEFSVNGTIKRNFARiGDWSIAKTRNASDEHYTIFKGLKNIdDGRRKtYLPLFDASELKAGDETGGTVRILLGSPDKEkEISEKAAKNFNIQYVAPHPRQTYGLSGVTTLNSPY 
           ________________________________________________________________243________________________________________________295__ 

           ____304_________________________________341___________355___________________                                             
 2yk4(A) : VIEDYILREIKKNPHTRYEIYTFFSGAALTkDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKLVP*                                             
         :                                                                                                                          
 2yk5(A) : VIEDYILREIKKNPHTRYEIYTFFSGAALTkDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKLVPR                                             
           ____304_________________________________341___________355___________________                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.7
Translation
(A) 		-0.2
Closure
(%) 		99.7
Bending Residues
( green ) 		  243 - 244
  295 - 298
  304 - 305
  341 - 349
  355 - 356
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download