Dicer

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dicer
  Conformer 1
(PDB)
2ffl (A)
  Conformer 2
(PDB)
2ffl (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 438 0.33   28 - 29   83 - 86   106 - 108   273 - 302   305 - 305   309 - 311   328 - 387   390 - 752
2 276 0.3   2 - 27   30 - 82   87 - 105   109 - 272   303 - 304   306 - 308   312 - 327   388 - 389

Sequence


           ___________________________27_____________________________________________________82__86________________105_____________ 
 2ffl(A) : GAMHALGHCCTVVTTRGPSHWLLLLDTHLGTLPGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEIGATMPHNEYTFPRFISNPPQFATLAFLPLLSP 
         :                                                                                                                          
 2ffl(C) : *AMHALGHCCTVVTTRGPSHWLLLLDTHLGTLPGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEIGATMPHNEYTFPRFISNPPQFATLAFLPLLSP 
           ___________________________27_____________________________________________________82__86________________105_____________ 

           ________________________________________________________________________________________________________________________ 
 2ffl(A) : TSPLDLRALMVTAQLMCDAKRLSDElSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRANESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIPAPGSdDLAPKLRFLPPE 
         :                                                                                                                          
 2ffl(C) : TSPLDLRALMVTAQLMCDAKRLSDElSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRANESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIPAP--dDLAPKLRFLPPE 
           ________________________________________________________________________________________________________________________ 

           ________________________272___________________________302______311_____________327______________________________________ 
 2ffl(A) : LCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALDKSFPDCGRIGGERYFAITAGLRLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVE 
         :                                                                                                                          
 2ffl(C) : LCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALDKSFPDCGRIGGERYFAITAGLRLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVE 
           ________________________272___________________________302______311_____________327______________________________________ 

           ___________________387__________________________________________________________________________________________________ 
 2ffl(A) : LKMELVRNEALNYLVQTLGLPQLAEFSNNLkSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTaCPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFL 
         :                                                                                                                          
 2ffl(C) : LKMELVRNEALNYLVQTLGLPQLAEFS---kSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTaCPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFL 
           ___________________387__________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ffl(A) : ERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQpPTIPVLYIYHRSVQCPVLYGSLTtGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAV 
         :                                                                                                                          
 2ffl(C) : ERLRDIPAEDMLDWYRLGIQFSHRSGLS-----vSVIDIMTHLARGLWLGSPGFYVEQpPTIPVLYIYHRSVQCPVLYGSLTtGPVASKVLALYEKILA---sGGSKHIAAQTVSRSLAV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ffl(A) : PIPSGTIPFLIRLLQIALTPHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGAFV 
         :                                                                                                                          
 2ffl(C) : PIPSGTIPFLIRLLQIALTPHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGAFV 
           ________________________________________________________________________________________________________________________ 

           ____________                                                                                                             
 2ffl(A) : REHVLPQVVADA                                                                                                             
         :                                                                                                                          
 2ffl(C) : REHVLPQVVADA                                                                                                             
           ____________                                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.0
Translation
(A)
0.0
Closure
(%)
58.9
Bending Residues
( green )
  27 - 30
  82 - 83
  86 - 87
  105 - 106
  108 - 109
  272 - 273
  302 - 309
  311 - 312
  327 - 328
  387 - 398
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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