Dihydrofolate Reductase (E.C.1.5.1.3)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrofolate Reductase (E.C.1.5.1.3)
  Conformer 1
(PDB)
4dfr (A)
  Conformer 2
(PDB)
5dfr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 102 0.63   3 - 39   41 - 41   55 - 60   89 - 93   99 - 99   101 - 157
2 48 0.55   40 - 40   42 - 54   61 - 88   94 - 98   100 - 100

Sequence


           _____________________________________39_____________54____60_________________________87____93___98______________________ 
 4dfr(A) : MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLDKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVE 
         :                                                                                                                          
 5dfr(A) : MISLIAALAVDRVIG-----pWNLPADLAWFKRNTLDKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVE 
           _____________________________________39_____________54____60_________________________87____93___98______________________ 

           _______________________________________                                                                                  
 4dfr(A) : GDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFKILERR                                                                                  
         :                                                                                                                          
 5dfr(A) : GDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR                                                                                  
           _______________________________________                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.8
Translation
(A)
-0.1
Closure
(%)
88.8
Bending Residues
( green )
  39 - 42
  54 - 55
  60 - 61
  87 - 89
  93 - 94
  98 - 101
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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