Endo-1,4-Beta-Xylanase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endo-1,4-Beta-Xylanase A
  Conformer 1
(PDB)
2dcy (A)
  Conformer 2
(PDB)
2qz3 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 141 0.42   5 - 6   22 - 30   38 - 58   66 - 170   180 - 183
2 38 0.55   7 - 21   31 - 37   59 - 65   171 - 179

Sequence


           ____5______________21_______30_____37__________________57____63_________________________________________________________ 
 2dcy(A) : ASTDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTGTYKGTVKSDGGTYDIYTTTRYNAPSIDG 
         :                                                                                                                          
 2qz3(A) : *STDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTGTYKGTVKSDGGTYDIYTTTRYNAPSIDG 
           ____5______________21_______30_____37__________________57____63_________________________________________________________ 

           _______________________________________________170______179______                                                        
 2dcy(A) : DRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATEGYQSSGSSNVTVW                                                        
         :                                                                                                                          
 2qz3(A) : DRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATAGYQSSGSSNVTVW                                                        
           _______________________________________________170______179______                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.3
Translation
(A)
-0.1
Closure
(%)
77.4
Bending Residues
( green )
  5 - 7
  21 - 24
  30 - 31
  37 - 38
  57 - 60
  63 - 66
  170 - 171
  179 - 180
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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