Endoplasmic Reticulum Aminopeptidase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endoplasmic Reticulum Aminopeptidase 1
  Conformer 1
(PDB)
2xdt (A)
  Conformer 2
(PDB)
3qnf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 199 1.35   400 - 418   518 - 701   703 - 705
2 410 0.82   48 - 399   419 - 517
3 62 0.97   702 - 702   706 - 808

Sequence


           ________________________________________________________________________________________________________________________ 
 2xdt(A) : PFPWNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGlSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 
         :                                                                                                                          
 3qnf(A) : PFPWNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGlSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2xdt(A) : KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTL 
         :                                                                                                                          
 3qnf(A) : KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTL 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________395______________ 
 2xdt(A) : LEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAME 
         :                                                                                                                          
 3qnf(A) : LEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAME 
           _______________________________________________________________________________________________________395______________ 

           ______418____________________________________________________________________517________________________________________ 
 2xdt(A) : VDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIgVDVKTMMNTWTLQKGFPLITITVRGRNVHMKQEHYMKGdTGYL 
         :                                                                                                                          
 3qnf(A) : VDALNSSHPVSTPVEN--------dDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASI-vDVKTMMNTWTLQKGFPLITITVRGRNVHMKQEHYMK--tGYL 
           ______418____________________________________________________________________517________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2xdt(A) : WHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIP 
         :                                                                                                                          
 3qnf(A) : WHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIP 
           ________________________________________________________________________________________________________________________ 

           ________________701_____________________________________________________________________________________________________ 
 2xdt(A) : MYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIE 
         :                                                                                                                          
 3qnf(A) : MYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKES------------------------------------------qIE 
           ________________701_____________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2xdt(A) : FALCRTQN-KEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGW 
         :                                                                                                                          
 3qnf(A) : FALCRTQNiEENIGWM-DKNF--DKIRVWLQS**************************************************************************************** 
           ________________________________________________________________________________________________________________________ 

           ___________________                                                                                                      
 2xdt(A) : MDKNFDKIRVWLQSEKLER                                                                                                      
         :                                                                                                                          
 3qnf(A) : *******************                                                                                                      
           ___________________                                                                                                      

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.3
Translation
(A)
-0.3
Closure
(%)
92.6
Bending Residues
( green )
  395 - 407
  418 - 419
  517 - 519
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
15.4
Translation
(A)
-0.1
Closure
(%)
8.3
Bending Residues
( green )
  701 - 706
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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