Ferric-Iron Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ferric-Iron Binding Protein
  Conformer 1
(PDB)
1r1n (A)
  Conformer 2
(PDB)
1d9y (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 156 0.67   102 - 225   276 - 307
2 149 0.57   3 - 101   226 - 275

Sequence


           __________________________________________________________________________________________________101___________________ 
 1r1n(A) : DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKS 
         :                                                                                                                          
 1d9y(A) : DITVYNGQHKEAAQAVADAFTRATGIKVKLNCAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKS 
           __________________________________________________________________________________________________101___________________ 

           ______________________________________________________________________________________________________225_______________ 
 1r1n(A) : VLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKD 
         :                                                                                                                          
 1d9y(A) : VLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKD 
           ______________________________________________________________________________________________________225_______________ 

           __________________________269________________________________________                                                    
 1r1n(A) : EAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK                                                    
         :                                                                                                                          
 1d9y(A) : EAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK                                                    
           __________________________269________________________________________                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.6
Translation
(A)
0.3
Closure
(%)
94.3
Bending Residues
( green )
  101 - 102
  225 - 227
  269 - 281
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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