Glucansucrase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucansucrase
  Conformer 1
(PDB)
3klk (A)
  Conformer 2
(PDB)
4amc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 845 1.58   794 - 1640
2 154 1.47   748 - 793   1641 - 1749

Sequence


           _____________________________________________793________________________________________________________________________ 
 3klk(A) : QYYIDPTTGQPRKNFLLQNGNDWIYFDKDTGAGTNALKLQFDKGTISADEQYRRGNEAYSYDDKSIENVNGYLTADTWYRPKQILKDGTTWTDSKETDMRPILMVWWPNTVTQAYYLNYM 
         :                                                                                                                          
 4amc(A) : QYYIDPTTGQPRKNFLLQSGNNWIYFDSDTGVGTNALELQFAKGTVSSNEQYRNGNAAYSYDDKSIENVNGYLTADTWYRPKQILKDGTTWTDSKETDMRPILMVWWPNTLTQAYYLNYM 
           _____________________________________________792________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3klk(A) : KQYGNLLPASLPSFSTDADSAELNHYSELVQQNIEKRISETGSTDWLRTLMHEFVTKNSMWNKDSENVDYGGLQLQGGFLKYVNSDLTKYANSDWRLMNRTATNIDGKNYGGAEFLLAND 
         :                                                                                                                          
 4amc(A) : KQHGNLLPSALPFFNADADPAELNHYSEIVQQNIEKRISETGNTDWLRTLMHDFVTNNPMWNKDSENVNFSGIQFQGGFLKYENSDLTPYANSDYRLLGRMPINIKDQTYRGQEFLLAND 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3klk(A) : IDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIRVDAVDNVDVDLLSIARDYFNAAYNMEQSDASANKHINILEDWGWDDPAYVNKIGNPQLTMDDRLRNAIMDTLSGAPDKNQAL 
         :                                                                                                                          
 4amc(A) : IDNSNPVVQAEQLNWLYYLLNFGTITANNDQANFDSVRVDAPDNIDADLMNIAQDYFNAAYGMD-SDAVSNKHINILEDWNHADPEYFNKIGNPQLTMDDTIKNSLNHGLSDATNR-WGL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3klk(A) : NKLITQSLVNRANDNTENAVIPSYNFVRAHDSNAQDQIRQAIQAATGKPYGEFNLDDEKKGMEAYINDQNSTNKKWNLYNMPSAYTILLTNKDSVPRVYYGDLYQDGGQYMEHKTRYFDT 
         :                                                                                                                          
 4amc(A) : DAIVHQSLADRENNSTENVVIPNYSFVRAHDNNSQDQIQNAIRDVTGKDYHTFTFEDEQKGIDAYIQDQNSTVKKYNLYNIPASYAILLTNKDTIPRVYYGDLYTDGGQYMEHQTRYYDT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3klk(A) : ITNLLKTRVKYVAGGQ---TMSVD-KNGILTNVRFGKGAMNATDTGTDETRTEGIGVVISNNTNLKLNDGESVVLHMGAAHKNQKYRAVILTTEDGVKNYTNDTDAPVAYTDANGDLHFT 
         :                                                                                                                          
 4amc(A) : LTNLLKSRVKYVAGGQSMQTMSVGGNNNILTSVRYGKGAMTATDTGTDETRTQGIGVVVSNTPNLKLGANDKVVLHMGAAHKNQQYRAAVLTTTDGVINYTSDQGAPVAMTDENGDLYLS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3klk(A) : NTNL--DGQQY--TAVRGYANPDVTGYLAVWVPAGAADDQDARTAPSDEAHTTKTAYRSNAALDSNVIYEGFSNFIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFL 
         :                                                                                                                          
 4amc(A) : SHNLVVNGKEEADTAVQGYANPDVSGYLAVWVPVGASDNQDARTAPSTEKNSGNSAYRTNAAFDSNVIFEAFSNFVYTPTKESERANVRIAQNADFFASLGFTSFEMAPQYNSSKDRTFL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3klk(A) : DSIIDNGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIYNLPGKEAVTVTRSDDHGTTWEVSPIKNVVYITNTIGGGEYQKKYGGEFLDTLQKEYPQLFSQVYPV 
         :                                                                                                                          
 4amc(A) : DSTIDNGYAFTDRYDLGMSEPNKYGTDEDLRNAIQALHKAGLQVMADWVPDQIYNLPGKEVATVTRVDDRGNVWKDAIINNNLYVVNTIGGGEYQKKYGGAFLDKLQKLYPEIFTKKQVS 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________1634_______________________________________________________________ 
 3klk(A) : TQTTIDPSVKIKEWSAKYFNGTNILHRGAGYVLRSNDGKYYNLGTSTQQFLPSQLSVQDNEGY-GFVKEGN--NYHYYDENKQMVKDAFIQDSVGNWYYLDKNGNMVANQSPVEISSNGA 
         :                                                                                                                          
 4amc(A) : TGVAIDPSQKITEWSAKYFNGTNILHRGSGYVLKADGGQYYNLGTTTKQFLPIQLTGEKKQGNEGFVK-GNDGNYYFYDLAGNMVKNTFIEDSVGNWYFFDQDGKMVENKHFVDVDSYGE 
           _____________________________________________________1639_______________________________________________________________ 

           ______________________________________________________________                                                           
 3klk(A) : SGTYLFLNNGTSFRSGLVKTDAGTYYYDGDGRMVRNQTVSDGAMTYVLDENGKLVSE*****                                                           
         :                                                                                                                          
 4amc(A) : KGTYFFLKNGVSFRGGLVQTDNGTYYFDNYGKMVRNQTINAGAMIYTLDENGKLIKASYNSD                                                           
           ______________________________________________________________                                                           

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
42.0
Translation
(A)
0.3
Closure
(%)
69.2
Bending Residues
( green )
  793 - 794
  1634 - 1642
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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