Glucosamine 6-Phosphate Deaminase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucosamine 6-Phosphate Deaminase
  Conformer 1
(PDB)
1dea (A)
  Conformer 2
(PDB)
1fs6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 0.55   6 - 138   145 - 146   155 - 200   235 - 235   237 - 244   261 - 262
2 70 0.81   3 - 5   139 - 144   147 - 154   201 - 234   236 - 236   245 - 260   263 - 264

Sequence


           ____5___________________________________________________________________________________________________________________ 
 1dea(A) : MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 
         :                                                                                                                          
 1fs6(A) : MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 
           ____5___________________________________________________________________________________________________________________ 

           _______________138___144______153____________________________________________200_______________________________234______ 
 1dea(A) : YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 
         :                                                                                                                          
 1fs6(A) : YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 
           _______________138___144______153____________________________________________200_______________________________234______ 

           _244_____________260______                                                                                               
 1dea(A) : EPSTMELKVKTLRYFNELEAENIKGL                                                                                               
         :                                                                                                                          
 1fs6(A) : EPSTMELKVKTLRYFNELEAENIKGL                                                                                               
           _244_____________260______                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.6
Translation
(A)
-0.1
Closure
(%)
70.8
Bending Residues
( green )
  5 - 6
  138 - 139
  144 - 147
  153 - 155
  200 - 201
  234 - 237
  244 - 246
  260 - 263
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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