Glucosamine--Fructose-6-Phosphate Aminotransferase [Isomerizing]

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucosamine--Fructose-6-Phosphate Aminotransferase [Isomerizing]
  Conformer 1
(PDB)
2bpl (B)
  Conformer 2
(PDB)
2j6h (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 366 0.9   237 - 239   244 - 606
2 238 1.18   3 - 236   240 - 243

Sequence


           ________________________________________________________________________________________________________________________ 
 2bpl(B) : CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVS 
         :                                                                                                                          
 2j6h(B) : CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________235_____ 
 2bpl(B) : ETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQY 
         :                                                                                                                          
 2j6h(B) : ETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQY 
           ________________________________________________________________________________________________________________235_____ 

           ________________________________________________________________________________________________________________________ 
 2bpl(B) : DAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLR 
         :                                                                                                                          
 2j6h(B) : DAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2bpl(B) : LSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIAL 
         :                                                                                                                          
 2j6h(B) : LSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIAL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2bpl(B) : EGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRN 
         :                                                                                                                          
 2j6h(B) : EGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRN 
           ________________________________________________________________________________________________________________________ 

           ________                                                                                                                 
 2bpl(B) : LAKSVTVE                                                                                                                 
         :                                                                                                                          
 2j6h(B) : LAKSVTVE                                                                                                                 
           ________                                                                                                                 

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.5
Translation
(A)
0.9
Closure
(%)
18.6
Bending Residues
( green )
  235 - 248
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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