3-Hydroxyisobutyrate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Hydroxyisobutyrate Dehydrogenase
  Conformer 1
(PDB)
2cvz (A)
  Conformer 2
(PDB)
2cvz (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 158 0.28   4 - 164
2 120 0.21   165 - 286

Sequence


           ________________________________________________________________________________________________________________________ 
 2cvz(A) : EKVAFIGLGAgYPaGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGA 
         :                                                                                                                          
 2cvz(D) : EKVAFIGLGAgYPaGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGA 
           ________________________________________________________________________________________________________________________ 

           __________________________________161___________________________________________________________________________________ 
 2cvz(A) : EAGTLTVlGGPEEAVERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAgVLDG 
         :                                                                                                                          
 2cvz(D) : EAGTLTVlGGPEEAVERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAgVLDG 
           __________________________________161___________________________________________________________________________________ 

           ___________________________________________                                                                              
 2cvz(A) : EKAPSPLLRLAREVYEaKRELGPDADHVEALRLLERWGGVEIR                                                                              
         :                                                                                                                          
 2cvz(D) : EKAPSPLLRLAREVYEaKRELGPDADHVEALRLLERWGGVEIR                                                                              
           ___________________________________________                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.5
Translation
(A)
-0.4
Closure
(%)
97.6
Bending Residues
( green )
  161 - 166
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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