2-Dehydropantoate 2-Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Dehydropantoate 2-Reductase
  Conformer 1
(PDB)
2ofp (B)
  Conformer 2
(PDB)
1ks9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 170 0.68   3 - 172
2 117 0.55   173 - 289

Sequence


           ________________________________________________________________________________________________________________________ 
 2ofp(B) : SMKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTT 
         :                                                                                                                          
 1ks9(A) : *MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTT 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________168_______________________________________________________________________ 
 2ofp(B) : HAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATA 
         :                                                                                                                          
 1ks9(A) : HAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATA 
           ______________________________________________168_______________________________________________________________________ 

           ______________________________________________________                                                                   
 2ofp(B) : ENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESEYE                                                                   
         :                                                                                                                          
 1ks9(A) : ENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESE**                                                                   
           ______________________________________________________                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.6
Translation
(A)
0.4
Closure
(%)
97.0
Bending Residues
( green )
  168 - 174
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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