Acetylglutamate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acetylglutamate Kinase
  Conformer 1
(PDB)
1oha (A)
  Conformer 2
(PDB)
2wxb (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 184 1.04   5 - 12   14 - 184   248 - 252
2 70 2.17   3 - 4   13 - 13   185 - 247   253 - 256

Sequence


           __3_____10______________________________________________________________________________________________________________ 
 1oha(A) : MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELG 
         :                                                                                                                          
 2wxb(B) : MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELG 
           __3_____10______________________________________________________________________________________________________________ 

           ___________________________________________________________182__________________________________________________________ 
 1oha(A) : HVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHA 
         :                                                                                                                          
 2wxb(B) : HVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHA 
           ___________________________________________________________182__________________________________________________________ 

           ____247__252______                                                                                                       
 1oha(A) : EQLPALFNGMPMGTRILA                                                                                                       
         :                                                                                                                          
 2wxb(B) : EQLPALFNGMPMGTRILA                                                                                                       
           ____247__252______                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.3
Translation
(A)
0.2
Closure
(%)
82.6
Bending Residues
( green )
  3 - 5
  10 - 14
  182 - 185
  247 - 248
  252 - 253
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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