Actin-Like Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-Like Protein 3
  Conformer 1
(PDB)
2p9n (A)
  Conformer 2
(PDB)
2p9p (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 222 0.38   7 - 150   161 - 166   179 - 192   307 - 317   334 - 335   337 - 341   344 - 351   365 - 366   369 - 410
2 158 0.45   151 - 155   167 - 178   193 - 306   318 - 333   336 - 336   342 - 343   352 - 364   367 - 368

Sequence


           ________________________________________________________________________________________________________________________ 
 2p9n(A) : AGRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEmKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFES 
         :                                                                                                                          
 2p9p(A) : *GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEmKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFES 
           ________________________________________________________________________________________________________________________ 

           ______________150__155______166_________178__183________________________________________________________________________ 
 2p9n(A) : FNVPGLYIAVQAVLALAASWTSvGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQ 
         :                                                                                                                          
 2p9p(A) : FNVPGLYIAVQAVLALAASWTS---rTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDG-kWIKQ 
           ______________150__155______166_________178__183________________________________________________________________________ 

           ________________________________________________306________317_____________333_____341___347__________364_______________ 
 2p9n(A) : YTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAVWF 
         :                                                                                                                          
 2p9p(A) : YTGINA--kKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAVWF 
           ________________________________________________306________317_____________333_____341___347__________364_______________ 

           _____________________________________                                                                                    
 2p9n(A) : GGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV                                                                                    
         :                                                                                                                          
 2p9p(A) : GGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF**                                                                                    
           _____________________________________                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.1
Translation
(A)
-0.2
Closure
(%)
69.8
Bending Residues
( green )
  150 - 151
  155 - 161
  166 - 167
  178 - 179
  183 - 193
  306 - 307
  317 - 318
  333 - 337
  341 - 344
  347 - 353
  364 - 369
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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