Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB)
1ijj (A)
  Conformer 2
(PDB)
2zwh (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 216 1.64   12 - 19   26 - 30   139 - 341
2 140 2.16   8 - 11   20 - 25   31 - 138   342 - 371

Sequence


           _________11______19____25___30__________________________________________________________________________________________ 
 1ijj(A) : ****TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQG-------kDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 
         :                                                                                                                          
 2zwh(A) : DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 
           _________11______19____25___30__________________________________________________________________________________________ 

           _______________138______________________________________________________________________________________________________ 
 1ijj(A) : QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 
         :                                                                                                                          
 2zwh(A) : QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 
           _______________138______________________________________________________________________________________________________ 

           __________________________________________________________________________________________________341___________________ 
 1ijj(A) : ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 
         :                                                                                                                          
 2zwh(A) : ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 
           __________________________________________________________________________________________________341___________________ 

           _______________                                                                                                          
 1ijj(A) : EYDEAGPSIVHRKC*                                                                                                          
         :                                                                                                                          
 2zwh(A) : EYDEAGPSIVHRKCF                                                                                                          
           _______________                                                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.9
Translation
(A)
0.0
Closure
(%)
58.9
Bending Residues
( green )
  11 - 12
  19 - 20
  25 - 26
  30 - 31
  138 - 139
  341 - 342
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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