Adenylate Kinase Isoenzyme-3 (Gtp: Amp Phosphotransferase) 3 (E.C.2.7.4.10)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase Isoenzyme-3 (Gtp: Amp Phosphotransferase) 3 (E.C.2.7.4.10)
  Conformer 1
(PDB)
2ak3 (A)
  Conformer 2
(PDB)
1ak2  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 172 3.43   5 - 125   163 - 213
2 37 1.45   126 - 162

Sequence


           ________________________________________________________________________________________________________________________ 
 2ak3(A) : GASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLTQYN-WLLDGFPRTLPQAEALD-----RAYQIDTVINLN 
         :                                                                                                                          
 1ak2    : ***PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFS 
           ________________________________________________________________________________________________________________________ 

           _________125______________________________158___________________________________________________________________         
 2ak3(A) : VPFEVIKQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFLQTKLPQRSQETSVTP         
         :                                                                                                                          
 1ak2    : IPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKATS*********         
           _________142______________________________175___________________________________________________________________         

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
73.7
Translation
(A)
-7.7
Closure
(%)
99.8
Bending Residues
( green )
  125 - 126
  158 - 163
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download