Amp-Dependent Protein Kinase, Alpha-Catalytic Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amp-Dependent Protein Kinase, Alpha-Catalytic Subunit
  Conformer 1
(PDB)
1jlu (E)
  Conformer 2
(PDB)
1cmk (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 218 0.93   14 - 29   99 - 105   123 - 184   188 - 321
2 115 1.35   30 - 98   106 - 122   185 - 187   322 - 348

Sequence


           ___________________________29___________________________________________________________________98____105______________1 
 1jlu(E) : ***********QESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 
         :                                                                                                                          
 1cmk(E) : GNAAAAKKGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVM 
           ___________________________29___________________________________________________________________98____105______________1 

           22___________________________________________________________184________________________________________________________ 
 1jlu(E) : EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW-lCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA 
         :                                                                                                                          
 1cmk(E) : EYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA 
           22___________________________________________________________184________________________________________________________ 

           _________________________________________________________________________316__________________________________           
 1jlu(E) : DQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRV-iNEKCGKEFTEF           
         :                                                                                                                          
 1cmk(E) : DQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFSEF           
           _________________________________________________________________________316__________________________________           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.4
Translation
(A)
0.9
Closure
(%)
93.0
Bending Residues
( green )
  29 - 30
  98 - 99
  105 - 106
  122 - 123
  184 - 185
  187 - 188
  316 - 329
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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